- Information
- Symbol: GS3
- MSU: None
- RAPdb: Os03g0407400
- Publication
- GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein, 2006, Theor Appl Genet.
- Evolutionary history of GS3, a gene conferring grain length in rice, 2009, Genetics.
- Multiple and independent origins of short seeded alleles of GS3 in rice, 2013, Breed Sci.
- GS3 participates in stigma exsertion as well as seed length in rice, 2011, Breeding Science.
- A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker, 2009, Theor Appl Genet.
- Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice, 2012, PLoS One.
- Linking differential domain functions of the GS3 protein to natural variation of grain size in rice, 2010, Proc Natl Acad Sci U S A.
- The plant-specific G protein gamma subunit AGG3 influences organ size and shape in Arabidopsis thaliana, 2012, New Phytol.
- Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131., 2018, Rice (N Y).
- Bin-based genome-wide association studies reveal superior alleles for improvement of appearance quality using a 4-way MAGIC population in rice, 2020, J Adv Res.
- Bin-based genome-wide association studies reveal superior alleles for improvement of appearance quality using a 4-way MAGIC population in rice, 2021, J Adv Res.
- Comprehensive Transcriptome Analysis of GS3 Near-Isogenic Lines During Panicle Development in Rice Oryza sativa L.., 2022, Front Genet.
- The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency., 2022, Plant Direct.
- Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice., 2022, Plant Biotechnol J.
- Genbank accession number
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- DQ355996
- AB488612
- AB488613
- AB488614
- AB488615
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- DQ355996
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- Key message
- Here we clone and characterize GS3, an evolutionarily important gene controlling grain size in rice
- We show that GS3 is highly expressed in young panicles in both short- and long-grained varieties but is not expressed in leaves or panicles after flowering, and we use genetic transformation to demonstrate that the dominant allele for short grain complements the long-grain phenotype
- An association study revealed that a C to A mutation in the second exon of GS3 (A allele) was associated with enhanced grain length in Oryza sativa but was absent from other Oryza species
- Evolutionary history of GS3, a gene conferring grain length in rice
- We demonstrate that GS3, one of the genes regulating seed length, also regulates stigma length and participates in stigma exsertion in rice
- Manipulation of GS3 should contribute to the improvement of hybrid seed-production efficiency
- GS3 participates in stigma exsertion as well as seed length in rice
- The GS3 locus located in the pericentromeric region of rice chromosome 3 has been frequently identified as a major QTL for both grain weight (a yield trait) and grain length (a quality trait) in the literature
- GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein
- GRAIN SIZE 3 (GS3) is a cloned gene that is related to seed length
- Here we report the genetic and molecular characterization of GS3, a major quantitative trait locus for grain size
- This study linked the functional domains of the GS3 protein to natural variation of grain size in rice
- Linking differential domain functions of the GS3 protein to natural variation of grain size in rice
- This study indicates a critical role for GS3 in defining the seed morphologies of modern subpopulations of O
- Comparative sequencing of GS3, the most important grain length (GL) QTL, has shown that differentiation of rice GL might be principally due to a single nucleotide polymorphism (SNP) between C and A in the second exon
- A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker
- This mutation causes a 178-aa truncation in the C-terminus of the predicted protein, suggesting that GS3 may function as a negative regulator for grain size
- Analysis of a random subpopulation of 201 individuals from the BC3F2 progeny confirmed that the GS3 locus explained 80-90% of the variation for grain weight and length in this population
- Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
- Here we report the discovery of new deletion alleles at the GS3 locus, each of which confer short seed
- Transformation experiments demonstrated that one of the deletion alleles of GS3 decrease the cell number in the upper epidermis of the glume, resulting in a significant reduction in seed length
- Multiple and independent origins of short seeded alleles of GS3 in rice
- Near isogenic lines of GS3 were developed by successive crossing and backcrossing Minghui 63 (large grain) with Chuan 7 (small grain), using Minghui 63 as the recurrent parent
- Using 1,384 individuals with recessive phenotype (large grain) from a total of 5,740 BC3F2 plants and 11 molecular markers based on sequence information, GS3 was mapped to a DNA fragment approximately 7
- Comparative sequencing analysis identified a nonsense mutation, shared among all the large-grain varieties tested in comparison with the small grain varieties, in the second exon of the putative GS3 gene
- Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.
- This result demonstrates that update the GS3 locus is a feasible and efficient and accurate way can be applied to improve grain size of rice
- Comprehensive Transcriptome Analysis of GS3 Near-Isogenic Lines During Panicle Development in Rice (Oryza sativa L.).
- The current understanding of the function of the GS3 gene, especially concerning the regulatory mechanism of panicle development, is still in its infancy
- This study found that the nonsense mutated GS3 gene, the gs3 allele of Akita 63, has a superior yield production with enlarged grain size
- The gs3 allele increased the yield with improvements in harvest index and NUE for yields per plant N content by analyzing the near-isogenic line of rice plants with a large grain (LG-Notohikari), which was developed by introducing the gs3 allele of Akita 63 into normal-grain japonica cultivar, Notohikari
- The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency.
- Thus, the gs3 allele would be promising for further yield increase without additional large input of N fertilization in non-gs3-allele rice varieties
- Connection
- GS3, PGL1, Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice, Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
- APG~OsPIL16, GS3, Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice, Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
- GS3, SRS3~OsKINESIN-13A~BHS1, Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice, Transcription of two known grain-length-related genes, GS3 and SRS3, was largely unaffected in the PGL1-overexpressing and APG-silenced plants
- GS3, Rice seed size is an important agronomic trait in determining the yield potential, and four seed size related genes (GS3, GW2, qSW5/GW5 and GIF1) have been cloned in rice so far, GW2, Seed size is determined by the combinations of the genes controlling different seed characteristics in rice.
- GS3, GW2~OsGW2, Seed size is determined by the combinations of the genes controlling different seed characteristics in rice., To shade light on the relationship of above four genes, gene expression analysis was performed with GS3-RNAi, GW2-RNAi lines and CSSL of qSW5 at the transcriptional level
- GS3, GW2~OsGW2, Seed size is determined by the combinations of the genes controlling different seed characteristics in rice., The results clearly showed that qSW5 and GW2 positively regulate the expression of GS3
- GS3, GW2~OsGW2, Seed size is determined by the combinations of the genes controlling different seed characteristics in rice., Additionally, GIF1 expression was found to be positively regulated by qSW5 but negatively by GW2 and GS3
- GL3.1~qGL3-1~qGL3~OsPPKL1, GS3, The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons., The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.
- GL3.1~qGL3-1~qGL3~OsPPKL1, GS3, The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons., To investigate the genetic interaction between two major grain length loci of rice, GS3 and qGL3, we developed two near-isogenic lines (NILs), NIL-GS3 (GS3/qGL3) and NIL-qgl3 (gs3/qgl3), in the genetic background of 93-11 (gs3/qGL3) by conventional backcrossing and marker-assisted selection (MAS)
- GL3.1~qGL3-1~qGL3~OsPPKL1, GS3, The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons., By comparing the grain lengths of 93-11, NIL-GS3, NIL-qgl3 and NIL-GS3/qgl3, we investigated the effects of GS3, qGL3 and GS3 GL3 interaction on grain length based on two-way ANOVA
- GL3.1~qGL3-1~qGL3~OsPPKL1, GS3, The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons., We found that GS3 and qGL3 had additive effects on rice grain length regulation
- GL3.1~qGL3-1~qGL3~OsPPKL1, GS3, The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons., Comparative analysis of primary panicle transcriptomes in the four NILs revealed that the genes affected by GS3 and qGL3 partially overlapped, and both loci might be involved in brassinosteroid signaling
- GS3, RGG1, Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS., In salinity-stressed RGG1 transgenic lines, the transcript levels of RGG2, RGB, RGA, DEP1, and GS3 also increased in addition to RGG1
- GGC2, GS3, A G-protein pathway determines grain size in rice., Three Gγ proteins, DEP1, GGC2 and GS3, antagonistically regulate grain size
- GS3, OsLG3b~OsMADS1~LHS1~AFO, G-protein βγ subunits determine grain size through interaction with MADS-domain transcription factors in rice., The Gγ subunits GS3 and DEP1 interact directly with the conserved keratin-like domain of MADS transcription factors, function as cofactors to enhance OsMADS1 transcriptional activity and promote the co-operative transactivation of common target genes, thereby regulating grain size and shape
- Gn1a~OsCKX2, GS3, Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes., Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.
- Gn1a~OsCKX2, GS3, Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes., Shuhui498 (R498) is an elite parent of heavy panicle hybrid rice by pyramiding the rare gn1a and null gs3 alleles
- Gn1a~OsCKX2, GS3, Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes., Here, we report that the combination of loss-of-function mutations in Grain number 1a (Gn1a) and Grain Size 3 (GS3) is responsible for the heavy panicle phenotype of the elite hybrid rice restorer line Shuhui498 (R498)
- Gn1a~OsCKX2, GS3, Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes., The null gn1a allele is the determinant factor for heavy panicles through increased grain number, while gs3 is associated with grain size and weight
- GS3, Osmyb3~SG3~SMG3, A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice., In this study, we focused on the isolation of a minor grain length QTL, small grain 3 (SG3), which is closely linked to the major QTL grain size 3 (GS3)
- GS3, Osmyb3~SG3~SMG3, A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice., The genetic effect of SG3 on grain length was dependent on GS3 status
- GS3, Osmyb3~SG3~SMG3, A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice., A large number of near-isogenic F2 plants in which GS3 was fixed with nonfunctional alleles were developed to clone SG3
- GS3, Osmyb3~SG3~SMG3, A minor QTL, SG3, encoding an R2R3-MYB protein, negatively controls grain length in rice., SG3 and GS3 were frequently in coupling phase in indica rice, making them good targets for the breeding of cultivars with short or long grains
- GS3, GW5~qSW5, Bin-based genome-wide association studies reveal superior alleles for improvement of appearance quality using a 4-way MAGIC population in rice, The superior alleles of GS3, GW5, GL3
- GS3, GS9, Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice., In this study, we identified three grain shape regulatory genes, GS3, GW8 and GS9, as potential candidate genes for targeted manipulation of grain shape and SER
- GS3, qGW8~OsSPL16~GW8, Targeted manipulation of grain shape genes effectively improves outcrossing rate and hybrid seed production in rice., In this study, we identified three grain shape regulatory genes, GS3, GW8 and GS9, as potential candidate genes for targeted manipulation of grain shape and SER
- GS3, GW7~GL7~SLG7~Chalk7, Verifying the Breeding Value of A Rare Haplotype of Chalk7, GS3, and Chalk5 to Improve Grain Appearance Quality in Rice., Verifying the Breeding Value of A Rare Haplotype of Chalk7, GS3, and Chalk5 to Improve Grain Appearance Quality in Rice.
- GS3, GW7~GL7~SLG7~Chalk7, Verifying the Breeding Value of A Rare Haplotype of Chalk7, GS3, and Chalk5 to Improve Grain Appearance Quality in Rice., Three allele-specific markers for Chalk7, and two other grain genes (GS3 and Chalk5) were developed, and used to stack the desirable alleles at these loci
- GS3, sh4~SHA1~SG5, Short grain 5 controls grain length in rice by regulating cell expansion., The effect of pyramiding sg5 and GS3 suggests that sg5 and GS3 regulate grain length independently
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