nitrogen leaf leaf senescence transcription factor early leaf senescence seedlings chloroplast senescence tillering xylem vascular bundle acetylcholinesterase shoot gravitropism gravitropic response stem root leaf development shoot temperature auxin resistance antiviral immunity development plant development fertility flower pollen panicle spikelet grain tiller anther sterility mature leaves stems seedling leaves seedling seedling death domestication awn grains per panicle grain number grain length mitochondria sheath submergence jasmonate disease disease resistance ja blight JA bacterial blight starch quality ATPase alkaline tolerance defense oxidative stress map-based cloning alkaline stress seed drought salinity salt seed germination photosynthesis tolerance potassium nucleus tapetum tapetum degeneration pollen development pollen wall cold tolerance oxidative growth cold stress abiotic stress ABA ethylene yield insect grain yield brown planthopper defense response vegetative drought tolerance crown root development root development cytokinin crown root elongation root elongation crown root initiation root initiation salicylic acid blast salt tolerance salt stress stress immunity biotic stress cold stress tolerance bacterial disease magnaporthe oryzae cell death cytoplasm floral meristem spikelet meristem inflorescence reproductive culm stamen architecture inflorescence architecture spikelet number floral meristem panicle size iaa homeostasis transporter breeding ABC transporter metal transport aluminum Al tolerance chloroplast developmental plumule Chl biosynthesis TPR proteins zinc palea gibberellin lemma adenylate kinase Kinase grain size brassinosteroid BR Brassinosteroid BR signaling lamina kinase Brassinosteroid Signaling nitrogen utilization grain quality grain filling cell division root growth auxin response plant growth Down-regulated genes salinity stress stomatal meiosis mitosis leaf shape ga cellulose cell wall dwarf cell elongation leaf color branching endosperm boron-toxicity tolerance auxin transport biomass seed weight cytokinin transport manganese cell cycle sterile floral organ phloem R protein jasmonic jasmonic acid height heading date plant height grain shape innate immunity immune response blast resistance signal transduction broad-spectrum disease resistance protein kinase seed size growth rate erect chloroplast development sugar glycosylation lodging lodging resistance photoinhibition abscisic acid xoo cadmium cadmium accumulation osmotic tolerance root apical meristem chilling calcium chilling stress cuticle flower development ovule reproductive development male reproductive development DNA repair Gibberellin crown crown root defense reactions elicitor-response flowering time GA anther development transcriptional regulator anaerobic condition anoxia flooded environment signaling pathway gene plasma membrane melatonin melatonin biosynthesis methyltransferase vascular development chlorophyll flavonoid pericarp CxC motif copper accumulation viral resistance copper tapetal resistant meiotic lateral root adventitious root transcription regulator heterosis seed development cell wall synthesis iron telomere lengthening telomere repeat-binding factor shoot apical meristem mycorrhizal symbiosis leaf erectness cell proliferation microspore male sterility cutin BR catabolism isoproturon metabolism detoxification lignin jasmonate response wounding internode length chalkiness strigolactone panicle architecture grain weight organ size tiller number GA biosynthesis ABA biosynthesis intercalary meristem sucrose grain width receptor kinase shattering seed shattering lignin biosynthesis spikelet development callus male fertility leaf angle flowering chlorophyll content Ubiquitin drought stress panicle length floral organ number reactive oxygen species reproductive growth endosperm development drought resistance stomata drought sensitivity PCD phytohormone sa SA pathogen primary root root hair starch biosynthesis GA biosynthetic JA biosynthesis non-differentiated calli ENDOSPERMLESS 1 syncytial endosperm development water loss biomass production rice stripe virus phosphate tryptophan aminotransferase small leaves large lamina joint angles IAA IAA biosynthesis auxin biosynthesis organ identity stroma nitrate axillary meristem spikelets per panicle photosystem GA inactivation grain-filling phosphatase submergence tolerance grain growth seed growth Fe transcription activator stress response seed phenotype transcriptional activator glucosyltransferase grain setting photoassimilate translocation ethylene response nutritional quality grain protein content grain protein Pi pi phosphorus Pi uptake blast disease crossover silicon plant architecture redox homeostasis hybrid sterility arsenite heat stress Heat Stress heat tolerance high-temperature tolerance HIGHER YIELD RICE drought stress response lesion defence defence response methyl jasmonate seedling growth seed length tiller angle vernalization lamina joint programmed cell death Xoo lesion mimic leaf size translation elongation factor epidermal cell morphogenesis vesicular vesicular trafficking cellular proliferation root architecture Pi homeostasis Pi signaling amylose content node xylem parenchyma silicon transporter oxidation step meiotic recombination PAMP-triggered immunity root length root meristem adventitious root formation shoot architecture epidermis tiller bud outgrowth sucrose supply cytokinin response ubiquitin E3 ligase anti-recombination activity dormancy ER stress nitrate transporter embryo cytosol flooding osmotic stress secondary metabolism plastid megagametogenesis CHASE domain histidine phosphotransfer proteins oil bodies insect resistance sugar homeostasis Heat Stress Response iron homeostasis mature anthers nucleocytoplasmic shuttling protein AM symbiosis blight disease panicle development amino acid transporter glutelin prolamin globulin albumin gibberellin biosynthesis dehydrogenase abscisic acid biosynthesis ABA catabolism arsenic accumulation As transport pollen exine formation protein phosphatase actin protein tapetal programmed cell death helicase potassium uptake fungal blast 6mA demethylation demethylation pyrophosphorylase phosphate transport phosphate signaling root system architecture internode elongation autophagy homologous recombination aluminium flavonoid biosynthesis chloroplast biogenesis female gametophyte development stomatal development angle of the lamina joint boron transporter boron uptake boron embryo development prostrate endoplasmic reticulum stress response Fe accumulation Fe homeostasis adaptability serotonin biosynthesis UV-B tolerance coleoptile elongation endosperm cellularization phytoalexin production aluminum tolerance fatty acid biosynthesis RSV histone trimethylation synapsis recombination JA receptor Pollen Fertility ent-CDP synthase biosynthesis of phytoalexins GA deficiency ethylene production cadmium tolerance stamen number phosphate starvation signaling phosphate starvation antimicrobial activity sucrose transporter sucrose transport seed dormancy bacterial blight disease JA signaling antioxidant defense glucanase silicon-dependent strengthening of rice cell wall floral meristem determinacy plant stature transcriptional repressor ER quality control carpel differentiation stoma differentiation cell fate transition Ni transport Co transport disease development starch accumulation fragile shoot drooping shoot grain ripening glycosyltransferase magnesium 5-aminolevulinic acid synthesis N utilization brassinosteroid phytohormone pathway leaf rolling steles pigment biosynthesis terpenoid biosynthesis seed vigour Salt Sensitivity tetrapyrrole biosynthesis Fe efficiency homeobox gene root number root meristem size double ovules developmental abnormality megagametophyte empty-glume identity floral organ number control stem strength JA signalling repressor triacylglycerol flooding tolerance phosphate homeostasis cell expansion aminobutyric acid transaminase ovule identity lateral root number lateral root length pathogen resistance NO3- transporter GA deactivation stigma length rachillae wounding response pollen hydration N-glycan formation auxin-mediated root development molybdenum remobilization Holliday junctions seed filling metallolthionein Zn distribution DNA damaging phosphate acquisition Casparian strip root endodermis MYB transcriptional activator cuticular wax biosynthesis wax biosynthesis JA signalling boric acid boron distribution exodermal cells phosphate starvation response transcription suppressor secondary cell wall pollen coat formation young panicles aluminium internalization aquaporin water channel sucrose translocation drought and oxidative stress stigma number homologous chromosome pairing symbiosis thermotolerance peptidoglycan and chitin signaling chitin signaling peptidoglycan signaling bioethanol bioethanol production sucrose synthase sulphotransferase chlorophyll biogenesis callus browning bidirectional helicase sugar transport style length vacuolar morphology herbicide resistance florigen transport tubulin tubulin synthesis phospholipase D activity pollen wall morphogenesis flavonoid metabolism flavone protoplasts cuticular wax formation root epidermal cells shoot meristem cuticle formation bacteria blight disease reticulum stress response inflorescence development root thickness plant defense signaling super apical dormant callose biosynthesis abscission-zone development ethylene homeostasis GKSKSF domain strigolactone biosynthesis BR homeostasis cellular activities PSS domain internode development Leu-rich repeat receptor kinase AM colonization pedicels XA21 signaling Xoo pathotypes stomatal density