nitrogen leaf leaf senescence transcription factor early leaf senescence seedlings chloroplast senescence tillering xylem vascular bundle acetylcholinesterase shoot gravitropism gravitropic response stem root leaf development shoot temperature auxin resistance antiviral immunity development plant development fertility flower pollen panicle spikelet grain tiller anther sterility mature leaves stems seedling leaves seedling seedling death domestication awn grains per panicle grain number grain length mitochondria sheath submergence jasmonate disease disease resistance ja blight JA bacterial blight starch quality ATPase alkaline tolerance defense oxidative stress map-based cloning alkaline stress seed drought salinity salt seed germination photosynthesis tolerance potassium cold tolerance oxidative growth cold stress abiotic stress ABA ethylene yield insect grain yield brown planthopper defense response vegetative drought tolerance crown root development root development cytokinin crown root elongation root elongation crown root initiation root initiation salicylic acid blast salt tolerance salt stress stress immunity biotic stress cold stress tolerance bacterial disease magnaporthe oryzae cell death R protein innate immunity pathogen cytoplasm floral meristem spikelet meristem inflorescence reproductive culm stamen architecture inflorescence architecture spikelet number floral meristem panicle size iaa homeostasis transporter breeding ABC transporter metal transport aluminum Al tolerance nucleus chloroplast developmental plumule Chl biosynthesis TPR proteins zinc palea gibberellin lemma adenylate kinase Kinase grain size brassinosteroid BR Brassinosteroid BR signaling lamina kinase Brassinosteroid Signaling grain filling cell division auxin response plant growth Down-regulated genes salinity stress stomatal meiosis mitosis leaf shape ga cellulose cell wall dwarf cell elongation leaf color branching endosperm boron-toxicity tolerance auxin transport biomass seed weight cytokinin transport salt sensitivity manganese cell cycle sterile floral organ phloem jasmonic jasmonic acid height heading date plant height immune response blast resistance signal transduction broad-spectrum disease resistance protein kinase seed size growth rate erect chloroplast development sugar glycosylation lodging lodging resistance photoinhibition abscisic acid xoo cadmium cadmium accumulation osmotic tolerance root apical meristem chilling calcium chilling stress cuticle flower development ovule reproductive development male reproductive development DNA repair Gibberellin crown crown root defense reactions elicitor-response flowering time GA anther development transcriptional regulator anaerobic condition anoxia flooded environment signaling pathway gene plasma membrane melatonin melatonin biosynthesis methyltransferase flavonoid pericarp CxC motif tapetum tapetal resistant meiotic lateral root adventitious root transcription regulator heterosis seed development iron telomere lengthening telomere repeat-binding factor shoot apical meristem mycorrhizal symbiosis leaf erectness cell proliferation microspore male sterility cutin BR catabolism lignin jasmonate response wounding internode length chalkiness strigolactone panicle architecture grain weight organ size cellular proliferation phytohormone nitrate chlorophyll content plant architecture tiller number intercalary meristem sucrose grain width receptor kinase shattering seed shattering lignin biosynthesis spikelet development callus leaf angle Ubiquitin drought stress tapetum degeneration panicle length floral organ number copper reactive oxygen species pollen development pollen wall root growth reproductive growth endosperm development grain quality drought resistance stomata drought sensitivity PCD sa SA primary root root hair starch biosynthesis GA biosynthetic JA biosynthesis non-differentiated calli ENDOSPERMLESS 1 syncytial endosperm development water loss biomass production GA biosynthesis rice stripe virus phosphate tryptophan aminotransferase small leaves large lamina joint angles IAA IAA biosynthesis auxin biosynthesis vascular development organ identity stroma axillary meristem spikelets per panicle photosystem GA inactivation phosphorus root length grain-filling phosphatase submergence tolerance grain growth seed growth Fe transcription activator stress response transcriptional activator glucosyltransferase grain setting photoassimilate translocation ethylene response nutritional quality grain shape adaptability flowering grain protein content grain protein Pi pi blast disease crossover herbicide resistance silicon redox homeostasis hybrid sterility arsenite HIGHER YIELD RICE chlorophyll biogenesis drought stress response lesion defence defence response methyl jasmonate seedling growth seed length tiller angle vernalization lamina joint programmed cell death lesion mimic translation elongation factor epidermal cell morphogenesis vesicular vesicular trafficking root architecture Pi homeostasis Pi signaling amylose content silicon transporter oxidation step cell wall synthesis meiotic recombination PAMP-triggered immunity root meristem adventitious root formation node shoot architecture epidermis tiller bud outgrowth sucrose supply cytokinin response ubiquitin E3 ligase anti-recombination activity Pi uptake catalytic potency dormancy ER stress protoplasts chlorophyll cytosol flooding osmotic stress secondary metabolism plastid megagametogenesis CHASE domain histidine phosphotransfer proteins oil bodies insect resistance heat stress Heat Stress Heat Stress Response iron homeostasis mature anthers nucleocytoplasmic shuttling protein AM symbiosis blight disease Pollen Fertility seed phenotype amino acid transporter glutelin prolamin globulin albumin gibberellin biosynthesis ABA biosynthesis dehydrogenase abscisic acid biosynthesis ABA catabolism arsenic accumulation As transport xylem parenchyma pollen exine formation protein phosphatase actin protein tapetal programmed cell death helicase potassium uptake fungal blast 6mA demethylation demethylation pyrophosphorylase phosphate transport phosphate signaling root system architecture internode elongation autophagy homologous recombination aluminium flavonoid biosynthesis chloroplast biogenesis female gametophyte development stomatal development heat tolerance angle of the lamina joint boron transporter boron uptake boron prostrate endoplasmic reticulum stress response coleoptile elongation endosperm cellularization phytoalexin production aluminum tolerance fatty acid biosynthesis peptidoglycan and chitin signaling chitin signaling peptidoglycan signaling chitin elicitor signaling pathway immunity signalling symbiosis RSV histone trimethylation synapsis recombination JA receptor ent-CDP synthase biosynthesis of phytoalexins GA deficiency ethylene production cadmium tolerance stamen number phosphate starvation signaling phosphate starvation Xoo antimicrobial activity sucrose transporter seed dormancy bacterial blight disease JA signaling glucanase silicon-dependent strengthening of rice cell wall floral meristem determinacy plant stature ER quality control carpel differentiation stoma differentiation cell fate transition florigen transport disease development starch accumulation fragile shoot drooping shoot glycosyltransferase magnesium brassinosteroid phytohormone pathway leaf rolling steles Salt Sensitivity tetrapyrrole biosynthesis Fe efficiency Fe accumulation homeobox gene root number root meristem size double ovules developmental abnormality megagametophyte empty-glume identity floral organ number control stem strength JA signalling repressor phosphate homeostasis aminobutyric acid transaminase ovule identity nitrate transporter lateral root number lateral root length pathogen resistance NO3- transporter GA deactivation stigma length rachillae wounding response pollen hydration N-glycan formation auxin-mediated root development BR homeostasis Holliday junctions seed filling metallolthionein Zn distribution DNA damaging phosphate acquisition MYB transcriptional activator JA signalling boric acid boron distribution exodermal cells phosphate starvation response N utilization transcription suppressor secondary cell wall pollen coat formation young panicles aluminium internalization aquaporin water channel sucrose translocation cuticular wax biosynthesis wax biosynthesis drought and oxidative stress stigma number homologous chromosome pairing bioethanol bioethanol production embryo sulphotransferase callus browning sucrose synthase bidirectional helicase style length vacuolar morphology pollen wall morphogenesis flavonoid metabolism flavone cuticular wax formation root epidermal cells leaf flattening shoot meristem cuticle formation bacteria blight disease reticulum stress response inflorescence development root thickness hybrid weakness plant defense signaling super apical dormant callose biosynthesis sucrose transport abscission-zone development ethylene homeostasis GKSKSF domain strigolactone biosynthesis cellular activities embryo development transcriptional repressor PSS domain internode development Leu-rich repeat receptor kinase AM colonization pedicels tyrosine biosynthesis XA21 signaling Xoo pathotypes stomatal density